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» On Suboptimal Alignments of Biological Sequences
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NIPS
2008
15 years 1 months ago
Efficient Inference in Phylogenetic InDel Trees
Accurate and efficient inference in evolutionary trees is a central problem in computational biology. While classical treatments have made unrealistic site independence assumption...
Alexandre Bouchard-Côté, Michael I. J...
BMCBI
2006
86views more  BMCBI 2006»
14 years 12 months ago
PHY*FI: fast and easy online creation and manipulation of phylogeny color figures
nd: The need to depict a phylogeny, or some other kind of abstract tree, is very frequently experienced by researchers from a broad range of biological and computational disciplin...
Jakob Fredslund
ISMB
1997
15 years 1 months ago
Standardized Representations of the Literature: Combining Diverse Sources of Ribosomal Data
We are building a knowledge base (KB) of published structural data on the 30s ribosomal subunit in prokaryotes. Our KB is distinguished by a standardized representation of biologi...
Russ B. Altman, Neil F. Abernethy, Richard O. Chen
BMCBI
2005
119views more  BMCBI 2005»
14 years 11 months ago
The distance-profile representation and its application to detection of distantly related protein families
Background: Detecting homology between remotely related protein families is an important problem in computational biology since the biological properties of uncharacterized protei...
Chin-Jen Ku, Golan Yona
ENGL
2008
78views more  ENGL 2008»
14 years 12 months ago
Threshold for Positional Weight Matrix
In biological sequence research, the positional weight matrix (PWM) is often used to search for putative transcription factor binding sites. A set of experimentally verified oligon...
Yunlian Pan, Sieu Phan