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BIBE
2007
IEEE
128views Bioinformatics» more  BIBE 2007»
15 years 6 months ago
QOMA2: Optimizing the alignment of many sequences
Abstract—We consider the problem of aligning multiple protein sequences with the goal of maximizing the SP (Sum-of-Pairs) score, when the number of sequences is large. The QOMA (...
Xu Zhang, Tamer Kahveci
BMCBI
2005
94views more  BMCBI 2005»
14 years 11 months ago
Measuring similarities between transcription factor binding sites
Background: Collections of transcription factor binding profiles (Transfac, Jaspar) are essential to identify regulatory elements in DNA sequences. Subsets of highly similar profi...
Szymon M. Kielbasa, Didier Gonze, Hanspeter Herzel
BMCBI
2004
150views more  BMCBI 2004»
14 years 11 months ago
Cross-species comparison significantly improves genome-wide prediction of cis-regulatory modules in Drosophila
Background: The discovery of cis-regulatory modules in metazoan genomes is crucial for understanding the connection between genes and organism diversity. It is important to quanti...
Saurabh Sinha, Mark D. Schroeder, Ulrich Unnerstal...
148
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PAMI
2012
13 years 2 months ago
A Least-Squares Framework for Component Analysis
— Over the last century, Component Analysis (CA) methods such as Principal Component Analysis (PCA), Linear Discriminant Analysis (LDA), Canonical Correlation Analysis (CCA), Lap...
Fernando De la Torre
TAL
2004
Springer
15 years 5 months ago
One Size Fits All? A Simple Technique to Perform Several NLP Tasks
Word fragments or n-grams have been widely used to perform different Natural Language Processing tasks such as information retrieval [1] [2], document categorization [3], automatic...
Daniel Gayo-Avello, Darío Álvarez Gu...