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BMCBI
2010
153views more  BMCBI 2010»
15 years 2 months ago
Challenges in microarray class discovery: a comprehensive examination of normalization, gene selection and clustering
Background: Cluster analysis, and in particular hierarchical clustering, is widely used to extract information from gene expression data. The aim is to discover new classes, or su...
Eva Freyhult, Mattias Landfors, Jenny Önskog,...
97
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BMCBI
2007
102views more  BMCBI 2007»
15 years 2 months ago
A comprehensive system for evaluation of remote sequence similarity detection
Background: Accurate and sensitive performance evaluation is crucial for both effective development of better structure prediction methods based on sequence similarity, and for th...
Yuan Qi, Ruslan Sadreyev, Yong Wang, Bong-Hyun Kim...
118
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BMCBI
2008
104views more  BMCBI 2008»
15 years 2 months ago
ReRep: Computational detection of repetitive sequences in genome survey sequences (GSS)
Background: Genome survey sequences (GSS) offer a preliminary global view of a genome since, unlike ESTs, they cover coding as well as non-coding DNA and include repetitive region...
Thomas D. Otto, Leonardo H. F. Gomes, Marcelo Alve...
ECCC
2010
99views more  ECCC 2010»
15 years 1 months ago
A Unified Framework for Testing Linear-Invariant Properties
Abstract--There has been a sequence of recent papers devoted to understanding the relation between the testability of properties of Boolean functions and the invariance of the prop...
Arnab Bhattacharyya, Elena Grigorescu, Asaf Shapir...
126
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BMCBI
2006
123views more  BMCBI 2006»
15 years 1 months ago
Permutation test for periodicity in short time series data
Background: Periodic processes, such as the circadian rhythm, are important factors modulating and coordinating transcription of genes governing key metabolic pathways. Theoretica...
Andrey A. Ptitsyn, Sanjin Zvonic, Jeffrey M. Gimbl...