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» On distance and similarity in fold space
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ICDM
2005
IEEE
125views Data Mining» more  ICDM 2005»
15 years 3 months ago
Alternate Representation of Distance Matrices for Characterization of Protein Structure
The most suitable method for the automated classification of protein structures remains an open problem in computational biology. In order to classify a protein structure with an...
Keith Marsolo, Srinivasan Parthasarathy
96
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ICPR
2010
IEEE
15 years 4 months ago
Semi-Supervised Distance Metric Learning by Quadratic Programming
This paper introduces a semi-supervised distance metric learning algorithm which uses pair-wise equivalence (similarity and dissimilarity) constraints to improve the original dist...
Hakan Cevikalp
RECOMB
2008
Springer
15 years 9 months ago
Algorithms for Joint Optimization of Stability and Diversity in Planning Combinatorial Libraries of Chimeric Proteins
Abstract. In engineering protein variants by constructing and screening combinatorial libraries of chimeric proteins, two complementary and competing goals are desired: the new pro...
Wei Zheng, Alan M. Friedman, Chris Bailey-Kellogg
ER
2005
Springer
134views Database» more  ER 2005»
15 years 3 months ago
Spatial Relations for Semantic Similarity Measurement
Measuring semantic similarity among concepts is the core method for assessing the degree of semantic interoperability within and between ontologies. In this paper, we propose to ex...
Angela Schwering, Martin Raubal
ICCV
2005
IEEE
15 years 3 months ago
Common Pattern Discovery Using Earth Mover's Distance and Local Flow Maximization
In this paper, we present a novel segmentationinsensitive approach for mining common patterns from 2 images. We develop an algorithm using the Earth Movers Distance (EMD) framewor...
Hung-Khoon Tan, Chong-Wah Ngo