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» On distance and similarity in fold space
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IADIS
2004
14 years 11 months ago
Relevant information retrieval for cooperative Web architecture
We describe an approach for constructing search spaces that consist of highly relevant web pages using similarities between the contents of linked web pages to represent their lin...
Aki Kobayashi, Kuangmin Tan, Katsunori Yamaoka, Yo...
BMCBI
2010
131views more  BMCBI 2010»
14 years 4 months ago
Dynamics based alignment of proteins: an alternative approach to quantify dynamic similarity
Background: The dynamic motions of many proteins are central to their function. It therefore follows that the dynamic requirements of a protein are evolutionary constrained. In or...
Márton Münz, Rune B. Lyngsø, Jo...
BMCBI
2010
163views more  BMCBI 2010»
14 years 9 months ago
Reduced representation of protein structure: implications on efficiency and scope of detection of structural similarity
Background: Computational comparison of two protein structures is the starting point of many methods that build on existing knowledge, such as structure modeling (including modeli...
Zong Hong Zhang, Hwee Kuan Lee, Ivana Mihalek
BMCBI
2007
135views more  BMCBI 2007»
14 years 9 months ago
Measuring similarities between gene expression profiles through new data transformations
Background: Clustering methods are widely used on gene expression data to categorize genes with similar expression profiles. Finding an appropriate (dis)similarity measure is crit...
Kyungpil Kim, Shibo Zhang, Keni Jiang, Li Cai, In-...
IWPC
2009
IEEE
15 years 4 months ago
Vector space analysis of software clones
In this paper, we introduce a technique for applying Independent Component Analysis to vector space representations of software code fragments such as methods or blocks. The dista...
Scott Grant, James R. Cordy