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BMCBI
2006
137views more  BMCBI 2006»
15 years 5 months ago
Sigma: multiple alignment of weakly-conserved non-coding DNA sequence
Background: Existing tools for multiple-sequence alignment focus on aligning protein sequence or protein-coding DNA sequence, and are often based on extensions to Needleman-Wunsch...
Rahul Siddharthan
BMCBI
2006
153views more  BMCBI 2006»
15 years 5 months ago
Intensity-based hierarchical Bayes method improves testing for differentially expressed genes in microarray experiments
Background: The small sample sizes often used for microarray experiments result in poor estimates of variance if each gene is considered independently. Yet accurately estimating v...
Maureen A. Sartor, Craig R. Tomlinson, Scott C. We...
129
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JEA
1998
133views more  JEA 1998»
15 years 4 months ago
A New Deterministic Parallel Sorting Algorithm with an Experimental Evaluation
We introduce a new deterministic parallel sorting algorithm based on the regular sampling approach. The algorithm uses only two rounds of regular all-to-all personalized communica...
David R. Helman, Joseph JáJá, David ...
SIAMSC
2010
125views more  SIAMSC 2010»
15 years 3 months ago
A Parallel Geometric Multigrid Method for Finite Elements on Octree Meshes
Abstract. In this article, we present a parallel geometric multigrid algorithm for solving elliptic partial differential equations (PDEs) on octree based conforming finite elemen...
Rahul S. Sampath, George Biros
TVLSI
2010
14 years 11 months ago
Asynchronous Current Mode Serial Communication
Abstract--An asynchronous high-speed wave-pipelined bit-serial link for on-chip communication is presented as an alternative to standard bit-parallel links. The link employs the di...
Rostislav (Reuven) Dobkin, Michael Moyal, Avinoam ...