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» On improving application utility prediction
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ICNP
1999
IEEE
15 years 4 months ago
Automated Protocol Implementations Based on Activity Threads
In this paper we present a new approach for the automated mapping of formal descriptions into activity thread implementations. Our approach resolves semantic conflicts by reorderi...
Peter Langendörfer, Hartmut König
BMCBI
2010
135views more  BMCBI 2010»
14 years 12 months ago
Quadratic variance models for adaptively preprocessing SELDI-TOF mass spectrometry data
Background: Surface enhanced laser desorption/ionization time-of-flight mass spectrometry (SELDI) is a proteomics tool for biomarker discovery and other high throughput applicatio...
Vincent A. Emanuele II, Brian M. Gurbaxani
BMCBI
2005
132views more  BMCBI 2005»
14 years 11 months ago
Kalign - an accurate and fast multiple sequence alignment algorithm
Background: The alignment of multiple protein sequences is a fundamental step in the analysis of biological data. It has traditionally been applied to analyzing protein families f...
Timo Lassmann, Erik L. L. Sonnhammer
BMCBI
2004
196views more  BMCBI 2004»
14 years 11 months ago
MUSCLE: a multiple sequence alignment method with reduced time and space complexity
Background: In a previous paper, we introduced MUSCLE, a new program for creating multiple alignments of protein sequences, giving a brief summary of the algorithm and showing MUS...
Robert C. Edgar
IPPS
2009
IEEE
15 years 6 months ago
Handling OS jitter on multicore multithreaded systems
Various studies have shown that OS jitter can degrade parallel program performance considerably at large processor counts. Most sources of system jitter fall broadly into 5 catego...
Pradipta De, Vijay Mann, Umang Mittaly