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» On numbers of Davenport-Schinzel sequences
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EOR
2006
70views more  EOR 2006»
15 years 1 months ago
A multi-period machine assignment problem
In this paper, a multi-period assignment problem is studied that arises as part of a weekly planning problem at mail processing and distribution centers. These facilities contain ...
Xinhui Zhang, Jonathan F. Bard
BMCBI
2008
117views more  BMCBI 2008»
15 years 1 months ago
CrossHybDetector: detection of cross-hybridization events in DNA microarray experiments
Background: DNA microarrays contain thousands of different probe sequences represented on their surface. These are designed in such a way that potential cross-hybridization reacti...
Paolo Uva, Emanuele de Rinaldis
JCB
2007
136views more  JCB 2007»
15 years 1 months ago
A Structure-Based Flexible Search Method for Motifs in RNA
The discovery of non-coding RNA (ncRNA) motifs and their role in regulating gene expression has recently attracted considerable attention. The goal is to discover these motifs in ...
Isana Veksler-Lublinsky, Michal Ziv-Ukelson, Danny...
RECOMB
2007
Springer
16 years 1 months ago
Design of Compact, Universal DNA Microarrays for Protein Binding Microarray Experiments
Our group has recently developed a compact, universal protein binding microarray (PBM) that can be used to determine the binding preferences of transcription factors (TFs) [1]. Thi...
Anthony A. Philippakis, Aaron M. Qureshi, Michael ...
ESA
2003
Springer
77views Algorithms» more  ESA 2003»
15 years 6 months ago
An Optimal Algorithm for the Maximum-Density Segment Problem
We address a fundamental problem arising from analysis of biomolecular sequences. The input consists of two numbers wmin and wmax and a sequence S of n number pairs (ai, wi) with ...
Kai-min Chung, Hsueh-I Lu