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» On numbers of Davenport-Schinzel sequences
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ICASSP
2011
IEEE
14 years 5 months ago
Extended Viterbi algorithm for optimized word HMMS
This paper deals with the problem of finding the optimal sequence of sub-word unit HMMs for a number of given utterances of a word. For this problem we present a new solution bas...
Michael Gerber, Tobias Kaufmann, Beat Pfister
BIOINFORMATICS
2011
14 years 8 months ago
Integrative network alignment reveals large regions of global network similarity in yeast and human
Motivation: High-throughput methods for detecting molecular interactions have produced large sets of biological network data with much more yet to come. Analogous to sequence alig...
Oleksii Kuchaiev, Natasa Przulj
BMCBI
2011
14 years 8 months ago
Shape-based peak identification for ChIP-Seq
Background: The identification of binding targets for proteins using ChIP-Seq has gained popularity as an alternative to ChIP-chip. Sequencing can, in principle, eliminate artifac...
Valerie Hower, Steven N. Evans, Lior Pachter
INFOCOM
2012
IEEE
13 years 4 months ago
SageShift: Managing SLAs for highly consolidated cloud
– Maximizing consolidation ratio, the number of virtual machines (VMs) in a physical machine, without violating customers’ SLAs is an important goal in the cloud. We show that ...
Orathai Sukwong, Akkarit Sangpetch, Hyong S. Kim
RECOMB
2009
Springer
16 years 2 months ago
Storage and Retrieval of Individual Genomes
A repetitive sequence collection is one where portions of a base sequence of length n are repeated many times with small variations, forming a collection of total length N. Example...
Gonzalo Navarro, Jouni Sirén, Niko Väl...