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» On numbers of Davenport-Schinzel sequences
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BIOCOMP
2007
15 years 2 months ago
Quality-Based Similarity Search for Biological Sequence Databases
Low-Complexity Regions (LCRs) of biological sequences are the main source of false positives in similarity searches for biological sequence databases. We consider the problem of ï...
Xuehui Li, Tamer Kahveci
SETA
2010
Springer
173views Mathematics» more  SETA 2010»
14 years 11 months ago
User-Irrepressible Sequences
Protocol sequences are binary and periodic sequences used in multiple-access scheme for collision channel without feedback. Each user reads out the bits from the assigned protocol ...
Kenneth W. Shum, Yijin Zhang, Wing Shing Wong
BMCBI
2005
147views more  BMCBI 2005»
15 years 1 months ago
GATA: a graphic alignment tool for comparative sequence analysis
Background: Several problems exist with current methods used to align DNA sequences for comparative sequence analysis. Most dynamic programming algorithms assume that conserved se...
David A. Nix, Michael B. Eisen
IV
2003
IEEE
111views Visualization» more  IV 2003»
15 years 6 months ago
Colour merging for the visualization of biomolecular sequence data
This paper introduces a novel technique for the visualization of data at various levels of detail. This is based on a colour-based representation of the data, where “high levelâ...
Mark Alston, Colin G. Johnson, Gary Robinson
BMCBI
2006
68views more  BMCBI 2006»
15 years 1 months ago
Detecting overlapping coding sequences in virus genomes
Background: Detecting new coding sequences (CDSs) in viral genomes can be difficult for several reasons. The typically compact genomes often contain a number of overlapping coding...
Andrew E. Firth, Chris M. Brown