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» On numbers of Davenport-Schinzel sequences
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BMCBI
2010
120views more  BMCBI 2010»
15 years 1 months ago
Short clones or long clones? A simulation study on the use of paired reads in metagenomics
Background: Metagenomics is the study of environmental samples using sequencing. Rapid advances in sequencing technology are fueling a vast increase in the number and scope of met...
Suparna Mitra, Max Schubach, Daniel H. Huson
BMCBI
2007
123views more  BMCBI 2007»
15 years 1 months ago
Tracembler - software for in-silico chromosome walking in unassembled genomes
Background: Whole genome shotgun sequencing produces increasingly higher coverage of a genome with random sequence reads. Progressive whole genome assembly and eventual finishing ...
Qunfeng Dong, Matthew D. Wilkerson, Volker Brendel
84
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INFOSCALE
2006
ACM
15 years 7 months ago
Scalable hardware accelerator for comparing DNA and protein sequences
Abstract— Comparing genetic sequences is a well-known problem in bioinformatics. Newly determined sequences are being compared to known sequences stored in databases in order to ...
Philippe Faes, Bram Minnaert, Mark Christiaens, Er...
SAC
2004
ACM
15 years 6 months ago
A new algorithm for gap constrained sequence mining
The sequence mining problem consists in finding frequent sequential patterns in a database of time-stamped events. Several application domains require limiting the maximum tempor...
Salvatore Orlando, Raffaele Perego, Claudio Silves...
CVPR
2001
IEEE
16 years 3 months ago
Evolving Image Segmentations for the Analysis of Video Sequences
A methodology for the segmentation of successive frames of a video sequence is presented. Traditional methods, treating each frame in isolation, are computationally expensive, ign...
A. A. Clark, Barry T. Thomas