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» On numbers of Davenport-Schinzel sequences
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CORR
2011
Springer
124views Education» more  CORR 2011»
14 years 8 months ago
Redundancy of minimal weight expansions in Pisot bases
Abstract. Motivated by multiplication algorithms based on redundant number representations, we study representations of an integer n as a sum n = k εkUk, where the digits εk are ...
Peter J. Grabner, Wolfgang Steiner
ICDE
2000
IEEE
82views Database» more  ICDE 2000»
16 years 2 months ago
Similarity Search for Multidimensional Data Sequences
Time-series data, which are a series of one-dimensional real numbers, have been studied in various database applications. In this paper, we extend the traditional similarity searc...
Seok-Lyong Lee, Seok-Ju Chun, Deok-Hwan Kim, Ju-Ho...
CSIE
2009
IEEE
15 years 8 months ago
Identifying DNA Strands Using a Kernel of Classified Sequences
— Automated DNA sequencing produces a large amount of raw DNA sequence data that then needs to be classified, organized, and annotation. One major application is the comparison o...
Guillermo Tonsmann, David D. Pollock, Wanjun Gu, T...
HPDC
2010
IEEE
15 years 2 months ago
Modeling sequence and function similarity between proteins for protein functional annotation
A common task in biological research is to predict function for proteins by comparing sequences between proteins of known and unknown function. This is often done using pair-wise ...
Roger Higdon, Brenton Louie, Eugene Kolker
BMCBI
2002
137views more  BMCBI 2002»
15 years 1 months ago
ORFer - retrieval of protein sequences and open reading frames from GenBank and storage into relational databases or text files
Background: Functional genomics involves the parallel experimentation with large sets of proteins. This requires management of large sets of open reading frames as a prerequisite ...
Konrad Büssow, Steve Hoffmann, Volker Sievert