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» On numbers of Davenport-Schinzel sequences
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JIB
2007
95views more  JIB 2007»
15 years 1 months ago
Mining for Single Nucleotide Polymorphisms in Expressed Sequence Tags
As a multitude of sequence data are published, discovering polymorphisms bioinformatically becomes a valid option. In silico Single Nucleotide Polymorphism (SNP) detection is base...
E. L. Souche, B. Hellemans, J. K. J. Van Houdt, A....
BMCBI
2008
128views more  BMCBI 2008»
15 years 1 months ago
In silico analysis of expressed sequence tags from Trichostrongylus vitrinus (Nematoda): comparison of the automated ESTExplorer
Background: The analysis of expressed sequence tags (EST) offers a rapid and cost effective approach to elucidate the transcriptome of an organism, but requires several computatio...
Shivashankar H. Nagaraj, Robin B. Gasser, Alasdair...
PRL
2007
108views more  PRL 2007»
15 years 27 days ago
Towards a measure of deformability of shape sequences
In this paper we develop a theory for characterizing how deformable a shape is given a sequence of its observations. We define a term called ‘‘deformability index’’ (DI) ...
Amit K. Roy Chowdhury
TITB
2008
204views more  TITB 2008»
15 years 26 days ago
A Cryptographic Approach to Securely Share and Query Genomic Sequences
To support large-scale biomedical research projects, organizations need to share person-specific genomic sequences without violating the privacy of their data subjects. In the past...
Murat Kantarcioglu, Wei Jiang, Ying Liu, Bradley M...
WABI
2007
Springer
102views Bioinformatics» more  WABI 2007»
15 years 7 months ago
Homology Search with Fragmented Nucleic Acid Sequence Patterns
The comprehensive annotation of non-coding RNAs in newly sequenced genomes is still a largely unsolved problem because many functional RNAs exhibit not only poorly conserved sequen...
Axel Mosig, Julian J.-L. Chen, Peter F. Stadler