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» On predicting secondary structure transition
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BIOINFORMATICS
2004
77views more  BIOINFORMATICS 2004»
14 years 9 months ago
An Iterated loop matching approach to the prediction of RNA secondary structures with pseudoknots
Jianhua Ruan, Gary D. Stormo, Weixiong Zhang
WABI
2005
Springer
107views Bioinformatics» more  WABI 2005»
15 years 3 months ago
Linear Time Algorithm for Parsing RNA Secondary Structure
Abstract Baharak Rastegari and Anne Condon Department of Computer Science, University of British Columbia Abstract. Accurate prediction of pseudoknotted RNA secondary structure is ...
Baharak Rastegari, Anne Condon
BMCBI
2011
14 years 1 months ago
Learning sparse models for a dynamic Bayesian network classifier of protein secondary structure
Background: Protein secondary structure prediction provides insight into protein function and is a valuable preliminary step for predicting the 3D structure of a protein. Dynamic ...
Zafer Aydin, Ajit Singh, Jeff Bilmes, William Staf...
IPPS
2008
IEEE
15 years 4 months ago
On the Effectiveness of Rebuilding RNA Secondary Structures from Sequence Chunks
Despite the computing power of emerging technologies, predicting long RNA secondary structures with thermodynamics-based methods is still infeasible, especially if the structures ...
Michela Taufer, Thamar Solorio, Abel Licon, David ...