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BIOINFORMATICS
2005
151views more  BIOINFORMATICS 2005»
14 years 11 months ago
Differential and trajectory methods for time course gene expression data
Motivation: The issue of high dimensionality in microarray data has been, and remains, a hot topic in statistical and computational analysis. Efficient gene filtering and differen...
Yulan Liang, Bamidele Tayo, Xueya Cai, Arpad Kelem...
NAR
2010
194views more  NAR 2010»
14 years 6 months ago
AltAnalyze and DomainGraph: analyzing and visualizing exon expression data
Alternative splicing is an important mechanism for increasing protein diversity. However, its functional effects are largely unknown. Here, we present our new software workflow co...
Dorothea Emig, Nathan Salomonis, Jan Baumbach, Tho...
ICS
2010
Tsinghua U.
15 years 1 months ago
Clustering performance data efficiently at massive scales
Existing supercomputers have hundreds of thousands of processor cores, and future systems may have hundreds of millions. Developers need detailed performance measurements to tune ...
Todd Gamblin, Bronis R. de Supinski, Martin Schulz...
SADM
2010
141views more  SADM 2010»
14 years 6 months ago
A parametric mixture model for clustering multivariate binary data
: The traditional latent class analysis (LCA) uses a mixture model with binary responses on each subject that are independent conditional on cluster membership. However, in many pr...
Ajit C. Tamhane, Dingxi Qiu, Bruce E. Ankenman
BMCBI
2010
165views more  BMCBI 2010»
14 years 11 months ago
Bayesian integrated modeling of expression data: a case study on RhoG
Background: DNA microarrays provide an efficient method for measuring activity of genes in parallel and even covering all the known transcripts of an organism on a single array. T...
Rashi Gupta, Dario Greco, Petri Auvinen, Elja Arja...