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BMCBI
2007
151views more  BMCBI 2007»
14 years 10 months ago
A statistical method to incorporate biological knowledge for generating testable novel gene regulatory interactions from microar
Background: The incorporation of prior biological knowledge in the analysis of microarray data has become important in the reconstruction of transcription regulatory networks in a...
Peter Larsen, Eyad Almasri, Guanrao Chen, Yang Dai
ESWA
2006
161views more  ESWA 2006»
14 years 10 months ago
Automated trend analysis of proteomics data using an intelligent data mining architecture
Proteomics is a field dedicated to the analysis and identification of proteins within an organism. Within proteomics, two-dimensional electrophoresis (2-DE) is currently unrivalle...
James Malone, Kenneth McGarry, Chris Bowerman
JSC
2006
106views more  JSC 2006»
14 years 10 months ago
Markov bases for noncommutative Fourier analysis of ranked data
To calibrate Fourier analysis of S5 ranking data by Markov chain Monte Carlo techniques, a set of moves (Markov basis) is needed. We calculate this basis, and use it to provide a ...
Persi Diaconis, Nicholas Eriksson
BMCBI
2011
14 years 2 months ago
Gene set analysis for longitudinal gene expression data
Background: Gene set analysis (GSA) has become a successful tool to interpret gene expression profiles in terms of biological functions, molecular pathways, or genomic locations. ...
Ke Zhang, Haiyan Wang, Arne C. Bathke, Solomon W. ...
BMCBI
2008
109views more  BMCBI 2008»
14 years 10 months ago
Merging microsatellite data: enhanced methodology and software to combine genotype data for linkage and association analysis
Background: Correctly merged data sets that have been independently genotyped can increase statistical power in linkage and association studies. However, alleles from microsatelli...
Angela P. Presson, Eric M. Sobel, Paivi Pajukanta,...