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BMCBI
2004
323views more  BMCBI 2004»
14 years 9 months ago
Biochemical Network Stochastic Simulator (BioNetS): software for stochastic modeling of biochemical networks
Background: Intrinsic fluctuations due to the stochastic nature of biochemical reactions can have large effects on the response of biochemical networks. This is particularly true ...
David Adalsteinsson, David McMillen, Timothy C. El...
CORR
2007
Springer
118views Education» more  CORR 2007»
14 years 9 months ago
Discriminated Belief Propagation
— Decisions on sources with memory transmitted over independent channels can be taken by employing trellis calculations. In this paper, it is shown that for a certain class of fu...
Uli Sorger
CMSB
2007
Springer
15 years 1 months ago
Efficient, Correct Simulation of Biological Processes in the Stochastic Pi-calculus
This paper presents a simulation algorithm for the stochastic -calculus, designed for the efficient simulation of biological systems with large numbers of molecules. The cost of a ...
Andrew Phillips, Luca Cardelli
ECML
2006
Springer
15 years 1 months ago
Learning Stochastic Tree Edit Distance
Trees provide a suited structural representation to deal with complex tasks such as web information extraction, RNA secondary structure prediction, or conversion of tree structured...
Marc Bernard, Amaury Habrard, Marc Sebban
94
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ACL
2008
14 years 11 months ago
Semi-Supervised Convex Training for Dependency Parsing
We present a novel semi-supervised training algorithm for learning dependency parsers. By combining a supervised large margin loss with an unsupervised least squares loss, a discr...
Qin Iris Wang, Dale Schuurmans, Dekang Lin