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» On the Approximation of Computing Evolutionary Trees
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STACS
2004
Springer
15 years 3 months ago
An Algorithmic View on OVSF Code Assignment
OrthogonalVariableSpreadingFactor(OVSF)codesareusedinUMTStosharetheradiospectrum among several connections of possibly different bandwidth requirements. The combinatorial core of t...
Thomas Erlebach, Riko Jacob, Matús Mihal&aa...
CIBCB
2007
IEEE
15 years 4 months ago
An Experimental Evaluation of Inversion-and Transposition-Based Genomic Distances through Simulations
— Rearrangements of genes and other syntenic blocks have become a topic of intensive study by phylogenists, comparative genomicists, and computational biologists: they are a feat...
Moulik Kothari, Bernard M. E. Moret
PPSN
1994
Springer
15 years 1 months ago
Genetic L-System Programming
We present the Genetic L-System Programming (GLP) paradigm for evolutionary creation and development of parallel rewrite systems (Lsystems, Lindenmayer-systems) which provide a com...
Christian Jacob
BMCBI
2011
14 years 4 months ago
A discriminative method for family-based protein remote homology detection that combines inductive logic programming and proposi
Background: Remote homology detection is a hard computational problem. Most approaches have trained computational models by using either full protein sequences or multiple sequenc...
Juliana S. Bernardes, Alessandra Carbone, Gerson Z...
RECOMB
2005
Springer
15 years 10 months ago
Lower Bounds for Maximum Parsimony with Gene Order Data
Abstract. In this paper, we study lower bound techniques for branchand-bound algorithms for maximum parsimony, with a focus on gene order data. We give a simple O(n3 ) time dynamic...
Abraham Bachrach, Kevin Chen, Chris Harrelson, Rad...