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» On the Approximation of Computing Evolutionary Trees
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CSB
2003
IEEE
106views Bioinformatics» more  CSB 2003»
15 years 2 months ago
Reconstruction of Ancestral Gene Order after Segmental Duplication and Gene Loss
As gene order evolves through a variety of chromosomal rearrangements, conserved segments provide important insight into evolutionary relationships and functional roles of genes. ...
Jun Huan, Jan Prins, Wei Wang 0010, Todd J. Vision
99
Voted
STOC
2005
ACM
184views Algorithms» more  STOC 2005»
15 years 3 months ago
Coresets in dynamic geometric data streams
A dynamic geometric data stream consists of a sequence of m insert/delete operations of points from the discrete space {1, . . . , ∆}d [26]. We develop streaming (1 + )-approxim...
Gereon Frahling, Christian Sohler
NIPS
2007
14 years 11 months ago
Fixing Max-Product: Convergent Message Passing Algorithms for MAP LP-Relaxations
We present a novel message passing algorithm for approximating the MAP problem in graphical models. The algorithm is similar in structure to max-product but unlike max-product it ...
Amir Globerson, Tommi Jaakkola
RECOMB
2006
Springer
15 years 10 months ago
A Parameterized Algorithm for Protein Structure Alignment
This paper proposes a parameterized algorithm for aligning two protein structures, in the case where one protein structure is represented by a contact map graph and the other by a ...
Jinbo Xu, Feng Jiao, Bonnie Berger
ICPR
2008
IEEE
15 years 4 months ago
Clustering by evidence accumulation on affinity propagation
If there are more clusters than the ideal, each intrinsic cluster will be split into several subsets. Theoretically, this split can be arbitrary and neighboring data points have a ...
Xuqing Zhang, Fei Wu, Yueting Zhuang