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» On the Approximation of Computing Evolutionary Trees
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86
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ECCB
2008
IEEE
15 years 4 months ago
Connect the dots: exposing hidden protein family connections from the entire sequence tree
Motivation: Mapping of remote evolutionary links is a classic computational problem of much interest. Relating protein families allows for functional and structural inference on u...
Yaniv Loewenstein, Michal Linial
JUCS
2008
172views more  JUCS 2008»
14 years 9 months ago
A Hybrid Transgenetic Algorithm for the Prize Collecting Steiner Tree Problem
: Evolutionary algorithms are effective search tools for tackling difficult optimization problems. In this paper an algorithm based on living processes where cooperation is the mai...
Elizabeth Ferreira Gouvea Goldbarg, Marco Cé...
ISMB
2007
15 years 1 hour ago
Automatic genome-wide reconstruction of phylogenetic gene trees
Gene duplication and divergence is a major evolutionary force. Despite the growing number of fully sequenced genomes, methods for investigating these events on a genome-wide scale...
Ilan Wapinski, Avi Pfeffer, Nir Friedman, Aviv Reg...
66
Voted
FOCS
1996
IEEE
15 years 1 months ago
A 3-Approximation for the Minimum Tree Spanning k Vertices
In thispaper we give a 3-approximationalgorithmfor the problem ojJnding a minimum tree spanning any k-vertices in a graph. Our algorithm extends to a 3-approximationalgorithmfor t...
Naveen Garg
JUCS
2010
148views more  JUCS 2010»
14 years 8 months ago
Applying RFD to Construct Optimal Quality-Investment Trees
: River Formation Dynamics (RFD) is an evolutionary computation method based on copying how drops form rivers by eroding the ground and depositing sediments. Given a cost-evaluated...
Pablo Rabanal, Ismael Rodríguez, Fernando R...