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» On the Comparability of Software Clustering Algorithms
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JIB
2008
76views more  JIB 2008»
14 years 11 months ago
WebStruct and VisualStruct: web interfaces and visualization for Structure software implemented in a cluster environment
Structure, is a widely used software tool to investigate population genetic structure with multi-locus genotyping data. The software uses an iterative algorithm to group individua...
B. Jayashree, S. Rajgopal, David A. Hoisington, V....
BMCBI
2011
14 years 6 months ago
Ultra-fast sequence clustering from similarity networks with SiLiX
Background: The number of gene sequences that are available for comparative genomics approaches is increasing extremely quickly. A current challenge is to be able to handle this h...
Vincent Miele, Simon Penel, Laurent Duret
81
Voted
ISPA
2005
Springer
15 years 5 months ago
COMPACT: A Comparative Package for Clustering Assessment
Abstract. There exist numerous algorithms that cluster data-points from largescale genomic experiments such as sequencing, gene-expression and proteomics. Such algorithms may emplo...
Roy Varshavsky, Michal Linial, David Horn
INFORMATICALT
2002
107views more  INFORMATICALT 2002»
14 years 11 months ago
Comparative Analysis of the Graphical Result Presentation in the SOM Software
In the paper, we analyze the software that realizes the self-organizing maps: SOM-PAK, SOM-TOOLBOX, Viscovery SOMine, Nenet, and two academic systems. Most of the software may be f...
Gintautas Dzemyda, Olga Kurasova
WCRE
2007
IEEE
15 years 5 months ago
Lossless Comparison of Nested Software Decompositions
Reverse engineering legacy software systems often involves the employment of clustering algorithms that automatically decompose a software system into subsystems. The decompositio...
Mark Shtern, Vassilios Tzerpos