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» On the Complexity of Computing Evolutionary Trees
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ESA
2008
Springer
106views Algorithms» more  ESA 2008»
14 years 11 months ago
An Experimental Analysis of Robinson-Foulds Distance Matrix Algorithms
In this paper, we study two fast algorithms--HashRF and PGM-Hashed--for computing the Robinson-Foulds (RF) distance matrix between a collection of evolutionary trees. The RF distan...
Seung-Jin Sul, Tiffani L. Williams
VISUALIZATION
2005
IEEE
15 years 3 months ago
Evolutionary Morphing
We introduce a technique to visualize the gradual evolutionary change of the shapes of living things as a morph between known three-dimensional shapes. Given geometric computer mo...
David F. Wiley, Nina Amenta, Dan A. Alcantara, Deb...
FCT
2007
Springer
15 years 3 months ago
Complexity of Pebble Tree-Walking Automata
We consider tree-walking automata using k pebbles. The pebbles are either strong (can be lifted from anywhere) or weak (can be lifted only when the automaton is on it). For each k,...
Mathias Samuelides, Luc Segoufin
ICALP
2004
Springer
15 years 3 months ago
Quantum Query Complexity of Some Graph Problems
Quantum algorithms for graph problems are considered, both in the adjacency matrix model and in an adjacency list-like array model. We give almost tight lower and upper bounds for ...
Christoph Dürr, Mark Heiligman, Peter H&oslas...
BMCBI
2007
156views more  BMCBI 2007»
14 years 10 months ago
Bio: : NEXUS: a Perl API for the NEXUS format for comparative biological data
Background: Evolutionary analysis provides a formal framework for comparative analysis of genomic and other data. In evolutionary analysis, observed data are treated as the termin...
Thomas Hladish, Vivek Gopalan, Chengzhi Liang, Wei...