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» On the Complexity of Computing Evolutionary Trees
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ICCS
2005
Springer
15 years 3 months ago
Phylogenetic Networks, Trees, and Clusters
Phylogenetic networks model evolutionary histories in the presence of non-treelike events such as hybrid speciation and horizontal gene transfer. In spite of their widely acknowled...
Luay Nakhleh, Li-San Wang
GECCO
2004
Springer
137views Optimization» more  GECCO 2004»
15 years 3 months ago
Evolving Better Multiple Sequence Alignments
Aligning multiple DNA or protein sequences is a fundamental step in the analyses of phylogeny, homology and molecular structure. Heuristic algorithms are applied because optimal mu...
Luke Sheneman, James A. Foster
RECOMB
2005
Springer
15 years 10 months ago
Stability of Rearrangement Measures in the Comparison of Genome Sequences
We present data-analytic and statistical tools for studying rates of rearrangement of whole genomes and to assess the stability of these methods with changes in the level of resol...
David Sankoff, Matthew Mazowita
CEC
2010
IEEE
14 years 1 months ago
Evoptool: An extensible toolkit for evolutionary optimization algorithms comparison
— This paper presents Evolutionary Optimization Tool (Evoptool), an optimization toolkit that implements a set of meta-heuristics based on the Evolutionary Computation paradigm. ...
Gabriele Valentini, Luigi Malagò, Matteo Ma...
EVOW
2009
Springer
15 years 4 months ago
Swarming for Games: Immersion in Complex Systems
Abstract. The swarm metaphor stands for dynamic, complex interaction networks with the possibility of emergent phenomena. In this work, we present two games that challenge the vide...
Sebastian von Mammen, Christian Jacob