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» On the Complexity of Computing Evolutionary Trees
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BMCBI
2010
135views more  BMCBI 2010»
14 years 10 months ago
GIGA: a simple, efficient algorithm for gene tree inference in the genomic age
Background: Phylogenetic relationships between genes are not only of theoretical interest: they enable us to learn about human genes through the experimental work on their relativ...
Paul D. Thomas
RECOMB
2006
Springer
15 years 10 months ago
Efficient Enumeration of Phylogenetically Informative Substrings
We study the problem of enumerating substrings that are common amongst genomes that share evolutionary descent. For example, one might want to enumerate all identical (therefore co...
Stanislav Angelov, Boulos Harb, Sampath Kannan, Sa...
RECOMB
2012
Springer
13 years 6 days ago
Recovering the Tree-Like Trend of Evolution Despite Extensive Lateral Genetic Transfer: A Probabilistic Analysis
Abstract. Lateral gene transfer (LGT) is a common mechanism of nonvertical evolution where genetic material is transferred between two more or less distantly related organisms. It ...
Sebastien Roch, Sagi Snir
ICCS
2005
Springer
15 years 3 months ago
Evolutionary Discovery of Arbitrary Self-replicating Structures
In this paper we describe our recent use of genetic programming methods to automatically discover CA rule sets that produce self-replication of arbitrary given structures. Our init...
Zhijian Pan, James A. Reggia
TOG
2012
222views Communications» more  TOG 2012»
13 years 7 days ago
Plastic trees: interactive self-adapting botanical tree models
We present a dynamic tree modeling and representation technique that allows complex tree models to interact with their environment. Our method uses changes in the light distributi...
Sören Pirk, Ondrej Stava, Julian Kratt, Miche...