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» On the Complexity of Computing Evolutionary Trees
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IPPS
2006
IEEE
15 years 3 months ago
Parallel implementation of a quartet-based algorithm for phylogenetic analysis
This paper describes a parallel implementation of our recently developed algorithm for phylogenetic analysis on the IBM BlueGene/L cluster [15]. This algorithm constructs evolutio...
Bing Bing Zhou, Daniel Chu, Monther Tarawneh, Ping...
ACL
2009
14 years 7 months ago
Automatic Cost Estimation for Tree Edit Distance Using Particle Swarm Optimization
Recently, there is a growing interest in working with tree-structured data in different applications and domains such as computational biology and natural language processing. Mor...
Yashar Mehdad
CORR
2008
Springer
75views Education» more  CORR 2008»
14 years 10 months ago
Soft-Input Soft-Output Sphere Decoding
Soft-input soft-output (SISO) detection algorithms form the basis for iterative decoding. The associated computational complexity often poses significant challenges for practical r...
Christoph Studer, Helmut Bölcskei
BMCBI
2011
14 years 4 months ago
PhyloSim - Monte Carlo simulation of sequence evolution in the R statistical computing environment
Background: The Monte Carlo simulation of sequence evolution is routinely used to assess the performance of phylogenetic inference methods and sequence alignment algorithms. Progr...
Botond Sipos, Tim Massingham, Gregory E. Jordan, N...
EVOW
2010
Springer
15 years 4 months ago
Grammatical Evolution Decision Trees for Detecting Gene-Gene Interactions
DEODHAR, SUSHAMNA DEODHAR. Using Grammatical Evolution Decision Trees for Detecting Gene-Gene Interactions in Genetic Epidemiology. (Under the direction of Dr. Alison Motsinger-Re...
Sushamna Deodhar, Alison A. Motsinger-Reif