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» On the Complexity of Universal Programs
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BMCBI
2007
102views more  BMCBI 2007»
15 years 4 months ago
Setting up a large set of protein-ligand PDB complexes for the development and validation of knowledge-based docking algorithms
Background: The number of algorithms available to predict ligand-protein interactions is large and ever-increasing. The number of test cases used to validate these methods is usua...
Luis A. Diago, Persy Morell, Longendri Aguilera, E...
KBSE
2007
IEEE
15 years 11 months ago
Assertion-based repair of complex data structures
Programmers have long used assertions to characterize properties of code. An assertion violation signals a corruption in the program state. At such a state, it is standard to term...
Bassem Elkarablieh, Ivan Garcia, Yuk Lai Suen, Sar...
136
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VMCAI
2005
Springer
15 years 10 months ago
On the Complexity of Error Explanation
When a system fails to satisfy its specification, the model checker produces an error trace (or counter-example) that demonstrates an undesirable behavior, which is then used in d...
Nirman Kumar, Viraj Kumar, Mahesh Viswanathan
122
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ESOP
2001
Springer
15 years 9 months ago
On the Complexity of Constant Propagation
Constant propagation (CP) is one of the most widely used optimizations in practice (cf. [9]). Intuitively, it addresses the problem of statically detecting whether an expression al...
Markus Müller-Olm, Oliver Rüthing
BMCBI
2004
196views more  BMCBI 2004»
15 years 4 months ago
MUSCLE: a multiple sequence alignment method with reduced time and space complexity
Background: In a previous paper, we introduced MUSCLE, a new program for creating multiple alignments of protein sequences, giving a brief summary of the algorithm and showing MUS...
Robert C. Edgar