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» On the Design of Codes for DNA Computing
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VLSID
2002
IEEE
106views VLSI» more  VLSID 2002»
16 years 1 days ago
SWASAD: An ASIC Design for High Speed DNA Sequence Matching
This paper presents the Smith and Waterman Algorithm-Specific ASIC Design (SWASAD) project. This is a hardware solution that implements the S&W algorithm.. The SWASAD is an imp...
Tony Han, Sri Parameswaran
ICNC
2005
Springer
15 years 5 months ago
On Designing DNA Databases for the Storage and Retrieval of Digital Signals
Abstract. In this paper we propose a procedure for the storage and retrieval of digital signals utilizing DNA. Digital signals are encoded in DNA sequences that satisfy among other...
Sotirios A. Tsaftaris, Aggelos K. Katsaggelos
WABI
2009
Springer
142views Bioinformatics» more  WABI 2009»
15 years 6 months ago
Back-Translation for Discovering Distant Protein Homologies
Background: Frameshift mutations in protein-coding DNA sequences produce a drastic change in the resulting protein sequence, which prevents classic protein alignment methods from ...
Marta Gîrdea, Laurent Noé, Gregory Ku...
IMSCCS
2006
IEEE
15 years 5 months ago
Degenerated Primer Design to Amplify the Heavy Chain Variable Region from Immunoglobulin cDNA
Background: The amplification of variable regions of immunoglobulins has become a major challenge in the cloning of antibody genes, whether from hybridoma cell lines or splenic B ...
Wang Ying, Chen Wei, Li Xu, Cheng Bing
CSB
2003
IEEE
113views Bioinformatics» more  CSB 2003»
15 years 5 months ago
An Optimal DNA Segmentation Based on the MDL Principle
: The biological world is highly stochastic and inhomogeneous in its behaviour. There are regions in DNA with high concentration of G or C bases; stretches of sequences with an abu...
Wojciech Szpankowski, Wenhui Ren, Lukasz Szpankows...