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» On the Design of Codes for DNA Computing
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BMCBI
2005
137views more  BMCBI 2005»
14 years 11 months ago
ArrayQuest: a web resource for the analysis of DNA microarray data
Background: Numerous microarray analysis programs have been created through the efforts of Open Source software development projects. Providing browser-based interfaces that allow...
Gary L. Argraves, Saurin D. Jani, Jeremy L. Barth,...
TCS
2008
14 years 11 months ago
On the weight of universal insertion grammars
We study the computational power of pure insertion grammars. We show that pure insertion grammars of weight 3 can characterize all recursively enumerable languages. This is achiev...
Lila Kari, Petr Sosík
DNA
2008
Springer
121views Bioinformatics» more  DNA 2008»
15 years 1 months ago
Isothermal Reactivating Whiplash PCR for Locally Programmable Molecular Computation
Whiplash PCR (WPCR), due to Hagiya et al. [1], is a novel technique for autonomous molecular computation where a state machine is implemented with a single stranded DNA molecule a...
John H. Reif, Urmi Majumder
ICDM
2002
IEEE
173views Data Mining» more  ICDM 2002»
15 years 4 months ago
Mining Genes in DNA Using GeneScout
In this paper, we present a new system, called GeneScout, for predicting gene structures in vertebrate genomic DNA. The system contains specially designed hidden Markov models (HM...
Michael M. Yin, Jason Tsong-Li Wang
BMCBI
2004
146views more  BMCBI 2004»
14 years 11 months ago
The InDeVal insertion/deletion evaluation tool: a program for finding target regions in DNA sequences and for aiding in sequence
Background: The program InDeVal was originally developed to help researchers find known regions of insertion/deletion activity (with the exception of isolated single-base indels) ...
Sierra D. Stoneberg Holt, Jason A. Holt