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» On the Design of Codes for DNA Computing
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DCC
2009
IEEE
16 years 9 days ago
Source Coding Scheme for Multiple Sequence Alignments
Rapid development of DNA sequencing technologies exponentially increases the amount of publicly available genomic data. Whole genome multiple sequence alignments represent a parti...
Pavol Hanus, Janis Dingel, Georg Chalkidis, Joachi...
BMCBI
2006
91views more  BMCBI 2006»
14 years 11 months ago
Cheminformatics methods for novel nanopore analysis of HIV DNA termini
Background: Channel current feature extraction methods, using Hidden Markov Models (HMMs) have been designed for tracking individual-molecule conformational changes. This informat...
Stephen Winters-Hilt, Matthew Landry, Mark Akeson,...
BIOCOMP
2009
14 years 9 months ago
Gene Expression Analysis Using Communications, Coding and Information Theory Based Models
- Identification and annotation of all the functional elements in the genome, including genes and regulatory sequences, is a fundamental challenge in genomics and computational bio...
Mohammad Al Bataineh, Lun Huang, Ismaeel Muhamed, ...
HPCC
2009
Springer
15 years 4 months ago
Load Scheduling Strategies for Parallel DNA Sequencing Applications
This paper studies a load scheduling strategy with nearoptimal processing time leveraging the computational characteristics of parallel DNA sequence alignment algorithms, specific...
Sudha Gunturu, Xiaolin Li, Laurence Tianruo Yang