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» On the Design of Codes for DNA Computing
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CASES
2006
ACM
15 years 5 months ago
Scalable subgraph mapping for acyclic computation accelerators
Computer architects are constantly faced with the need to improve performance and increase the efficiency of computation in their designs. To this end, it is increasingly common ...
Nathan Clark, Amir Hormati, Scott A. Mahlke, Sami ...
PEPM
2009
ACM
15 years 8 months ago
Designing aspects for side-effect localization
Computation performed in many typical aspects involve side effects. In a purely functional setting, adding such aspects using techniques such as monadification will generally lea...
Kung Chen, Jia-Yin Lin, Shu-Chun Weng, Siau-Cheng ...
CIKM
2008
Springer
15 years 1 months ago
A new method for indexing genomes using on-disk suffix trees
We propose a new method to build persistent suffix trees for indexing the genomic data. Our algorithm DiGeST (Disk-Based Genomic Suffix Tree) improves significantly over previous ...
Marina Barsky, Ulrike Stege, Alex Thomo, Chris Upt...
GECCO
2005
Springer
189views Optimization» more  GECCO 2005»
15 years 5 months ago
Molecular programming: evolving genetic programs in a test tube
We present a molecular computing algorithm for evolving DNA-encoded genetic programs in a test tube. The use of synthetic DNA molecules combined with biochemical techniques for va...
Byoung-Tak Zhang, Ha-Young Jang
PPAM
2007
Springer
15 years 6 months ago
Enhancing Productivity in High Performance Computing through Systematic Conditioning
Abstract. In order to take full advantage of high-end computing platforms, scientific applications often require modifications to source codes, and to their build systems that ge...
Magdalena Slawiñska, Jaroslaw Slawinski, Va...