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» On the Design of Codes for DNA Computing
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DNA
2004
Springer
146views Bioinformatics» more  DNA 2004»
15 years 3 months ago
Partial Words for DNA Coding
A very basic problem in all DNA computations is finding a good encoding. Apart from the fact that they must provide a solution, the strands involved should not exhibit any undesir...
Peter Leupold
GECCO
2005
Springer
136views Optimization» more  GECCO 2005»
15 years 3 months ago
Evolutionary computation and the c-value paradox
The C-value Paradox is the name given in biology to the wide variance in and often very large amount of DNA in eukaryotic genomes and the poor correlation between DNA length and p...
Sean Luke
ICPR
2006
IEEE
15 years 10 months ago
A Hybrid, Recursive Algorithm for Clustering Expressed Sequence Tags in Chlamydomonas reinhardtii
We present an efficient, fully automated algorithm to assemble ESTs into full-length cDNA sequences that represent the complete coding regions of a gene. Our EST clustering algori...
Arthur Grossman, Charles Hauser, Hilary J. Holz, J...
IPPS
2000
IEEE
15 years 2 months ago
A Surface-Based DNA Algorithm for the Expansion of Symbolic Determinants
In the past few years since Adleman’s pioneering work on solving the HPP(Hamiltonian Path Problem) with a DNA-based computer [1], many algorithms have been designed on solving NP...
Zhiquan Frank Qiu, Mi Lu
BMCBI
2005
142views more  BMCBI 2005»
14 years 9 months ago
transAlign: using amino acids to facilitate the multiple alignment of protein-coding DNA sequences
Background: Alignments of homologous DNA sequences are crucial for comparative genomics and phylogenetic analysis. However, multiple alignment represents a computationally difficu...
Olaf R. P. Bininda-Emonds