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» On the Design of Codes for DNA Computing
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BMCBI
2007
233views more  BMCBI 2007»
14 years 12 months ago
160-fold acceleration of the Smith-Waterman algorithm using a field programmable gate array (FPGA)
Background: To infer homology and subsequently gene function, the Smith-Waterman (SW) algorithm is used to find the optimal local alignment between two sequences. When searching s...
Isaac T. S. Li, Warren Shum, Kevin Truong
BMCBI
2011
14 years 3 months ago
Protein alignment algorithms with an efficient backtracking routine on multiple GPUs
Background: Pairwise sequence alignment methods are widely used in biological research. The increasing number of sequences is perceived as one of the upcoming challenges for seque...
Jacek Blazewicz, Wojciech Frohmberg, Michal Kierzy...
INFOCOM
2009
IEEE
15 years 6 months ago
Nuclei: GPU-Accelerated Many-Core Network Coding
—While it is a well known result that network coding achieves optimal flow rates in multicast sessions, its potential for practical use has remained to be a question, due to its...
Hassan Shojania, Baochun Li, Xin Wang
FUIN
2008
107views more  FUIN 2008»
14 years 12 months ago
Modelling and Simulation of Quantum Teleportation and Dense Coding Using Predicate/Transition-Nets
Reachability analysis is one of the most successful methods used in design and validation of protocols for classical communication, whereas the predicate/transition-net formalism i...
Kimmo Varpaaniemi, Leo Ojala
VISSOFT
2005
IEEE
15 years 5 months ago
DependencyViewer - A Tool for Visualizing Package Design Quality Metrics
DependencyViewer helps to control package dependencies to avoid degeneration of package designs. To this end it computes design quality metrics including stabilabstractness for ea...
Michael Wilhelm, Stephan Diehl