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» On the Design of Codes for DNA Computing
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IDA
2008
Springer
14 years 11 months ago
ExpertDiscovery system application for the hierarchical analysis of eukaryotic transcription regulatory regions based on DNA cod
We developed Relational Data Mining approach which allows to overcome essential limitations of the Data Mining and Knowledge Discovery techniques. In the paper the approach was im...
I. V. Khomicheva, Eugenii E. Vityaev, Elena A. Ana...
ECAL
2005
Springer
15 years 5 months ago
The Genetic Coding Style of Digital Organisms
Recently, all the human genes were identified. But understanding the functions coded in the genes is of course a much harder problem. We are used to view DNA as some sort of a comp...
Philip Gerlee, Torbjörn Lundh
DNA
2006
Springer
146views Bioinformatics» more  DNA 2006»
15 years 3 months ago
On Times to Compute Shapes in 2D Tile Self-assembly
We study the times to grow structures within the tile self-assembly model proposed by Winfree, and the possible shapes that can be achieved. Our earlier work was confined to the g...
Yuliy M. Baryshnikov, Edward G. Coffman Jr., Boons...
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RECOMB
2004
Springer
15 years 12 months ago
Designing multiple simultaneous seeds for DNA similarity search
The challenge of similarity search in massive DNA sequence databases has inspired major changes in BLAST-style alignment tools, which accelerate search by inspecting only pairs of...
Yanni Sun, Jeremy Buhler
RECOMB
2000
Springer
15 years 3 months ago
Universal DNA tag systems: a combinatorial design scheme
Custom-designed DNA arrays offer the possibility of simultaneously monitoring thousands of hybridization reactions. These arrays show great potential for many medical and scientif...
Amir Ben-Dor, Richard M. Karp, Benno Schwikowski, ...