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RECOMB
2010
Springer
15 years 4 months ago
Dense Subgraphs with Restrictions and Applications to Gene Annotation Graphs
Abstract. In this paper, we focus on finding complex annotation patterns representing novel and interesting hypotheses from gene annotation data. We define a generalization of th...
Barna Saha, Allison Hoch, Samir Khuller, Louiqa Ra...
WSDM
2009
ACM
161views Data Mining» more  WSDM 2009»
15 years 4 months ago
Predicting the readability of short web summaries
Readability is a crucial presentation attribute that web summarization algorithms consider while generating a querybaised web summary. Readability quality also forms an important ...
Tapas Kanungo, David Orr
FOCS
2009
IEEE
15 years 4 months ago
Instance-Optimal Geometric Algorithms
We prove the existence of an algorithm A for computing 2-d or 3-d convex hulls that is optimal for every point set in the following sense: for every set S of n points and for ever...
Peyman Afshani, Jérémy Barbay, Timot...
ICPR
2008
IEEE
15 years 4 months ago
Clustering by evidence accumulation on affinity propagation
If there are more clusters than the ideal, each intrinsic cluster will be split into several subsets. Theoretically, this split can be arbitrary and neighboring data points have a ...
Xuqing Zhang, Fei Wu, Yueting Zhuang
BIBM
2007
IEEE
132views Bioinformatics» more  BIBM 2007»
15 years 4 months ago
A Divide-and-Conquer Implementation of Three Sequence Alignment and Ancestor Inference
In this paper, we present an algorithm to simultaneously align three biological sequences with affine gap model and infer their common ancestral sequence. Our algorithm can be fu...
Feng Yue, Jijun Tang