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» On the Evolution of Evolutionary Algorithms
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BMCBI
2010
108views more  BMCBI 2010»
15 years 5 months ago
iGTP: A software package for large-scale gene tree parsimony analysis
Background: The ever-increasing wealth of genomic sequence information provides an unprecedented opportunity for large-scale phylogenetic analysis. However, species phylogeny infe...
Ruchi Chaudhary, Mukul S. Bansal, André Weh...
PLDI
2004
ACM
15 years 11 months ago
Fast searches for effective optimization phase sequences
It has long been known that a fixed ordering of optimization phases will not produce the best code for every application. One approach for addressing this phase ordering problem ...
Prasad Kulkarni, Stephen Hines, Jason Hiser, David...
BMCBI
2008
86views more  BMCBI 2008»
15 years 6 months ago
Subfamily specific conservation profiles for proteins based on n-gram patterns
Background: A new algorithm has been developed for generating conservation profiles that reflect the evolutionary history of the subfamily associated with a query sequence. It is ...
John K. Vries, Xiong Liu
CEC
2007
IEEE
16 years 18 days ago
Solving multimodal problems via multiobjective techniques with Application to phase equilibrium detection
Abstract— For solving multimodal problems by means of evolutionary algorithms, one often resorts to multistarts or niching methods. The latter approach the question: ‘What is e...
Mike Preuss, Günter Rudolph, Feelly Tumakaka
WABI
2005
Springer
15 years 11 months ago
Computing the Quartet Distance Between Trees of Arbitrary Degree
Abstract. We present two algorithms for computing the quartet distance between trees of arbitrary degree. The quartet distance between two unrooted evolutionary trees is the number...
Chris Christiansen, Thomas Mailund, Christian N. S...