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» On the Evolution of Evolutionary Algorithms
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RECOMB
2004
Springer
15 years 10 months ago
The Distribution of Inversion Lengths in Bacteria
The distribution of the lengths of genomic segments inverte during the evolutionary divergence of two species cannot be inferred d rectly from the output of genome rearrangement al...
Adrian Maler, David Sankoff, Elisabeth R. M. Tilli...
ISBRA
2009
Springer
15 years 4 months ago
Untangling Tanglegrams: Comparing Trees by Their Drawings
A tanglegram is a pair of trees on the same set of leaves with matching leaves in the two trees joined by an edge. Tanglegrams are widely used in biology – to compare evolutiona...
Balaji Venkatachalam, Jim Apple, Katherine St. Joh...
KDD
2007
ACM
124views Data Mining» more  KDD 2007»
15 years 4 months ago
Hierarchical mixture models: a probabilistic analysis
Mixture models form one of the most widely used classes of generative models for describing structured and clustered data. In this paper we develop a new approach for the analysis...
Mark Sandler
GECCO
2005
Springer
124views Optimization» more  GECCO 2005»
15 years 3 months ago
Evolving petri nets to represent metabolic pathways
Given concentrations of metabolites over a sequence of time steps, the metabolic pathway prediction problem seeks a set of reactions and rate constants for them that could yield t...
Jeremiah Nummela, Bryant A. Julstrom
COCOON
2008
Springer
14 years 11 months ago
Haplotype Inferring Via Galled-Tree Networks Is NP-Complete
The problem of determining haplotypes from genotypes has gained considerable prominence in the research community since the beginning of the HapMap project. Here the focus is on de...
Arvind Gupta, Ján Manuch, Ladislav Stacho, ...