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BIOINFORMATICS
2008
172views more  BIOINFORMATICS 2008»
14 years 10 months ago
Fitting a geometric graph to a protein-protein interaction network
Motivation: Finding a good network null model for protein-protein interaction (PPI) networks is a fundamental issue. Such a model would provide insights into the interplay between...
Desmond J. Higham, Marija Rasajski, Natasa Przulj
BMCBI
2006
137views more  BMCBI 2006»
14 years 9 months ago
Sigma: multiple alignment of weakly-conserved non-coding DNA sequence
Background: Existing tools for multiple-sequence alignment focus on aligning protein sequence or protein-coding DNA sequence, and are often based on extensions to Needleman-Wunsch...
Rahul Siddharthan
TKDE
2008
156views more  TKDE 2008»
14 years 9 months ago
A Framework for Mining Sequential Patterns from Spatio-Temporal Event Data Sets
Given a large spatio-temporal database of events, where each event consists of the fields event ID, time, location, and event type, mining spatio-temporal sequential patterns ident...
Yan Huang, Liqin Zhang, Pusheng Zhang
CEC
2010
IEEE
14 years 8 months ago
Gaussian Adaptation as a unifying framework for continuous black-box optimization and adaptive Monte Carlo sampling
Abstract— We present a unifying framework for continuous optimization and sampling. This framework is based on Gaussian Adaptation (GaA), a search heuristic developed in the late...
Christian L. Müller, Ivo F. Sbalzarini
POPL
2012
ACM
13 years 5 months ago
The ins and outs of gradual type inference
Gradual typing lets programmers evolve their dynamically typed programs by gradually adding explicit type annotations, which confer benefits like improved performance and fewer r...
Aseem Rastogi, Avik Chaudhuri, Basil Hosmer