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» On the Expressiveness and Complexity of ATL
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SODA
2010
ACM
213views Algorithms» more  SODA 2010»
15 years 7 months ago
Regular Expression Matching with Multi-Strings
Regular expression matching is a key task (and often computational bottleneck) in a variety of software tools and applications. For instance, the standard grep and sed utilities, ...
Philip Bille, Mikkel Thorup
CASCON
2007
1035views Education» more  CASCON 2007»
14 years 11 months ago
An IDE for software development using tabular expressions
We present preliminary work on an IDE for formal software development using tabular expressions as the basis for precise specifications and descriptions of software behaviour. 1 ...
Dennis K. Peters, Mark Lawford, Baltasar Tranc&oac...
BMCBI
2010
106views more  BMCBI 2010»
14 years 10 months ago
A computational evaluation of over-representation of regulatory motifs in the promoter regions of differentially expressed genes
Background: Observed co-expression of a group of genes is frequently attributed to co-regulation by shared transcription factors. This assumption has led to the hypothesis that pr...
Guofeng Meng, Axel Mosig, Martin Vingron
BMCBI
2007
169views more  BMCBI 2007»
14 years 10 months ago
Transcriptional regulatory network refinement and quantification through kinetic modeling, gene expression microarray data and i
Background: Gene expression microarray and other multiplex data hold promise for addressing the challenges of cellular complexity, refined diagnoses and the discovery of well-targ...
Abdallah Sayyed-Ahmad, Kagan Tuncay, Peter J. Orto...
BMCBI
2008
160views more  BMCBI 2008»
14 years 10 months ago
A comparison of four clustering methods for brain expression microarray data
Background: DNA microarrays, which determine the expression levels of tens of thousands of genes from a sample, are an important research tool. However, the volume of data they pr...
Alexander L. Richards, Peter Holmans, Michael C. O...