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» On the Multiple Gene Duplication Problem
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148
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JDA
2007
156views more  JDA 2007»
15 years 1 months ago
A linear time algorithm for the inversion median problem in circular bacterial genomes
In the median problem, we are given a distance or dissimilarity measure d, three genomes G1, G2, and G3, and we want to find a genome G (a median) such that the sum 3 i=1 d(G, Gi...
Enno Ohlebusch, Mohamed Ibrahim Abouelhoda, Kathri...
COCOA
2009
Springer
15 years 6 months ago
Linear Coherent Bi-cluster Discovery via Line Detection and Sample Majority Voting
Discovering groups of genes that share common expression profiles is an important problem in DNA microarray analysis. Unfortunately, standard bi-clustering algorithms often fail t...
Yi Shi, Zhipeng Cai, Guohui Lin, Dale Schuurmans
127
Voted
BMCBI
2008
126views more  BMCBI 2008»
15 years 1 months ago
c-REDUCE: Incorporating sequence conservation to detect motifs that correlate with expression
Background: Computational methods for characterizing novel transcription factor binding sites search for sequence patterns or "motifs" that appear repeatedly in genomic ...
Katerina Kechris, Hao Li
BMCBI
2008
114views more  BMCBI 2008»
15 years 1 months ago
Dinucleotide controlled null models for comparative RNA gene prediction
Background: Comparative prediction of RNA structures can be used to identify functional noncoding RNAs in genomic screens. It was shown recently by Babak et al. [BMC Bioinformatic...
Tanja Gesell, Stefan Washietl
120
Voted
GECCO
2000
Springer
153views Optimization» more  GECCO 2000»
15 years 5 months ago
Applying Genetic Algorithms to Multi-Objective Land Use Planning
This paper explores the application of multiobjective Genetic Algorithms (mGAs) to rural land use planning, a spatial allocation problem. Two mGAs are proposed. Both share an unde...
Keith B. Matthews, Susan Craw, Stewart Elder, Alan...