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» On the Multiple Gene Duplication Problem
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WWW
2008
ACM
16 years 12 days ago
iRobot: an intelligent crawler for web forums
We study in this paper the Web forum crawling problem, which is a very fundamental step in many Web applications, such as search engine and Web data mining. As a typical user-crea...
Rui Cai, Jiang-Ming Yang, Wei Lai, Yida Wang, Lei ...
ICML
2005
IEEE
16 years 16 days ago
Active learning for sampling in time-series experiments with application to gene expression analysis
Many time-series experiments seek to estimate some signal as a continuous function of time. In this paper, we address the sampling problem for such experiments: determining which ...
Rohit Singh, Nathan Palmer, David K. Gifford, Bonn...
RECOMB
2008
Springer
16 years 1 days ago
Internal Validation of Ancestral Gene Order Reconstruction in Angiosperm Phylogeny
Abstract. Whole genome doubling (WGD), a frequent occurrence during the evolution of the angiopsperms, complicates ancestral gene order reconstruction due to the multiplicity of so...
David Sankoff, Chunfang Zheng, P. Kerr Wall, Claud...
SC
2005
ACM
15 years 5 months ago
A Scalable Distributed Parallel Breadth-First Search Algorithm on BlueGene/L
Many emerging large-scale data science applications require searching large graphs distributed across multiple memories and processors. This paper presents a distributed breadth...
Andy Yoo, Edmond Chow, Keith W. Henderson, Will Mc...
BIBE
2007
IEEE
151views Bioinformatics» more  BIBE 2007»
15 years 1 months ago
On the Effectiveness of Constraints Sets in Clustering Genes
—In this paper, we have modified a constrained clustering algorithm to perform exploratory analysis on gene expression data using prior knowledge presented in the form of constr...
Erliang Zeng, Chengyong Yang, Tao Li, Giri Narasim...