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» On the Multiple Gene Duplication Problem
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VLDB
2002
ACM
110views Database» more  VLDB 2002»
14 years 11 months ago
Eliminating Fuzzy Duplicates in Data Warehouses
The duplicate elimination problem of detecting multiple tuples, which describe the same real world entity, is an important data cleaning problem. Previous domain independent solut...
Rohit Ananthakrishna, Surajit Chaudhuri, Venkatesh...
106
Voted
BMCBI
2010
108views more  BMCBI 2010»
14 years 11 months ago
iGTP: A software package for large-scale gene tree parsimony analysis
Background: The ever-increasing wealth of genomic sequence information provides an unprecedented opportunity for large-scale phylogenetic analysis. However, species phylogeny infe...
Ruchi Chaudhary, Mukul S. Bansal, André Weh...
BMCBI
2010
120views more  BMCBI 2010»
14 years 11 months ago
Estimating true evolutionary distances under rearrangements, duplications, and losses
Background: The rapidly increasing availability of whole-genome sequences has enabled the study of whole-genome evolution. Evolutionary mechanisms based on genome rearrangements h...
Yu Lin, Vaibhav Rajan, Krister M. Swenson, Bernard...
SIAMCOMP
2000
90views more  SIAMCOMP 2000»
14 years 11 months ago
From Gene Trees to Species Trees
This paper studies various algorithmic issues in reconstructing a species tree from gene trees under the duplication and the mutation cost model. This is a fundamental problem in c...
Bin Ma, Ming Li, Louxin Zhang
92
Voted
CIBCB
2005
IEEE
15 years 5 months ago
Heuristic Algorithm for Computing Reversal Distance with MultiGene Families via Binary Integer Programming
— Hannenhalli and Pevzner developed the first polynomial-time algorithm for the combinatorial problem of sorting of signed genomic data. Their algorithm solves the minimum numbe...
Jakkarin Suksawatchon, Chidchanok Lursinsap, Mikae...