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» On the Optimality of Spiral Search
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PLDI
2004
ACM
15 years 4 months ago
Fast searches for effective optimization phase sequences
It has long been known that a fixed ordering of optimization phases will not produce the best code for every application. One approach for addressing this phase ordering problem ...
Prasad Kulkarni, Stephen Hines, Jason Hiser, David...
LCPC
2005
Springer
15 years 4 months ago
Analytic Models and Empirical Search: A Hybrid Approach to Code Optimization
Compilers employ system models, sometimes implicitly, to make code optimization decisions. These models are analytic; they reflect their implementor’s understanding and beliefs ...
Arkady Epshteyn, María Jesús Garzar&...
BMCBI
2007
166views more  BMCBI 2007»
14 years 11 months ago
Optimization of filtering criterion for SEQUEST database searching to improve proteome coverage in shotgun proteomics
Background: In proteomic analysis, MS/MS spectra acquired by mass spectrometer are assigned to peptides by database searching algorithms such as SEQUEST. The assignations of pepti...
Xinning Jiang, Xiaogang Jiang, Guanghui Han, Mingl...
ESA
2008
Springer
136views Algorithms» more  ESA 2008»
15 years 29 days ago
Oblivious Randomized Direct Search for Real-Parameter Optimization
The focus is on black-box optimization of a function f : RN R given as a black box, i. e. an oracle for f-evaluations. This is commonly called direct search, and in fact, most meth...
Jens Jägersküpper
IJCAI
2003
15 years 17 days ago
Comparing Best-First Search and Dynamic Programming for Optimal Multiple Sequence Alignment
Sequence alignment is an important problem in computational biology. We compare two different approaches to the problem of optimally aligning two or more character strings: bounde...
Heath Hohwald, Ignacio Thayer, Richard E. Korf