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» On the Relative Sizes of Learnable Sets
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BMCBI
2010
143views more  BMCBI 2010»
14 years 7 months ago
A genome alignment algorithm based on compression
Background: Traditional genome alignment methods consider sequence alignment as a variation of the string edit distance problem, and perform alignment by matching characters of th...
Minh Duc Cao, Trevor I. Dix, Lloyd Allison
110
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TKDE
2011
332views more  TKDE 2011»
14 years 4 months ago
Adaptive Cluster Distance Bounding for High-Dimensional Indexing
—We consider approaches for similarity search in correlated, high-dimensional data-sets, which are derived within a clustering framework. We note that indexing by “vector appro...
Sharadh Ramaswamy, Kenneth Rose
BMCBI
2011
14 years 4 months ago
Errors in CGAP xProfiler and cDNA DGED: the importance of library parsing and gene selection algorithms
Background: The Cancer Genome Anatomy Project (CGAP) xProfiler and cDNA Digital Gene Expression Displayer (DGED) have been made available to the scientific community over a decade...
Andrew T. Milnthorpe, Mikhail Soloviev
FCT
2009
Springer
15 years 4 months ago
Competitive Group Testing and Learning Hidden Vertex Covers with Minimum Adaptivity
Suppose that we are given a set of n elements d of which are “defective”. A group test can check for any subset, called a pool, whether it contains a defective. It is well know...
Peter Damaschke, Azam Sheikh Muhammad
RECOMB
2009
Springer
15 years 10 months ago
Spatial Clustering of Multivariate Genomic and Epigenomic Information
The combination of fully sequence genomes and new technologies for high density arrays and ultra-rapid sequencing enables the mapping of generegulatory and epigenetics marks on a g...
Rami Jaschek, Amos Tanay