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SODA
1992
ACM
123views Algorithms» more  SODA 1992»
14 years 10 months ago
Computing Minimal Spanning Subgraphs in Linear Time
Let P be a property of undirected graphs. We consider the following problem: given a graph G that has property P, nd a minimal spanning subgraph of G with property P. We describe ...
Xiaofeng Han, Pierre Kelsen, Vijaya Ramachandran, ...
BMCBI
2010
98views more  BMCBI 2010»
14 years 9 months ago
miRMaid: a unified programming interface for microRNA data resources
Background: MicroRNAs (miRNAs) are endogenous small RNAs that play a key role in post-transcriptional regulation of gene expression in animals and plants. The number of known miRN...
Anders Jacobsen, Anders Krogh, Sakari Kauppinen, M...
66
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BMCBI
2010
137views more  BMCBI 2010»
14 years 9 months ago
TassDB2 - A comprehensive database of subtle alternative splicing events
Background: Subtle alternative splicing events involving tandem splice sites separated by a short (2-12 nucleotides) distance are frequent and evolutionarily widespread in eukaryo...
Rileen Sinha, Thorsten Lenser, Niels Jahn, Ulrike ...
BMCBI
2010
96views more  BMCBI 2010»
14 years 9 months ago
ChIPpeakAnno: a Bioconductor package to annotate ChIP-seq and ChIP-chip data
Background: Chromatin immunoprecipitation (ChIP) followed by high-throughput sequencing (ChIP-seq) or ChIP followed by genome tiling array analysis (ChIP-chip) have become standar...
Lihua J. Zhu, Claude Gazin, Nathan D. Lawson, Herv...
BMCBI
2010
119views more  BMCBI 2010»
14 years 9 months ago
Multi-task learning for cross-platform siRNA efficacy prediction: an in-silico study
Background: Gene silencing using exogenous small interfering RNAs (siRNAs) is now a widespread molecular tool for gene functional study and new-drug target identification. The key...
Qi Liu, Qian Xu, Vincent Wenchen Zheng, Hong Xue, ...
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