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RECOMB
2006
Springer
16 years 6 months ago
Identifiability Issues in Phylogeny-Based Detection of Horizontal Gene Transfer
Prokaryotic organisms share genetic material across species boundaries by means of a process known as horizontal gene transfer (HGT). Detecting this process bears great significanc...
Cuong Than, Derek A. Ruths, Hideki Innan, Luay Nak...
RECOMB
2006
Springer
16 years 6 months ago
Efficient Enumeration of Phylogenetically Informative Substrings
We study the problem of enumerating substrings that are common amongst genomes that share evolutionary descent. For example, one might want to enumerate all identical (therefore co...
Stanislav Angelov, Boulos Harb, Sampath Kannan, Sa...
RECOMB
2005
Springer
16 years 6 months ago
Improved Pattern-Driven Algorithms for Motif Finding in DNA Sequences
Abstract. In order to guarantee that the optimal motif is found, traditional pattern-driven approaches perform an exhaustive search over all candidate motifs of length l. We develo...
Sing-Hoi Sze, Xiaoyan Zhao
CADE
2005
Springer
16 years 6 months ago
Reflecting Proofs in First-Order Logic with Equality
Our general goal is to provide better automation in interactive proof assistants such as Coq. We present an interpreter of proof traces in first-order multi-sorted logic with equal...
Evelyne Contejean, Pierre Corbineau
ICALP
2009
Springer
16 years 5 months ago
Annotations in Data Streams
The central goal of data stream algorithms is to process massive streams of data using sublinear storage space. Motivated by work in the database community on outsourcing database...
Amit Chakrabarti, Graham Cormode, Andrew McGregor
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