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» On the correlation of binary sequences
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GECCO
2009
Springer
173views Optimization» more  GECCO 2009»
15 years 4 months ago
Creating regular expressions as mRNA motifs with GP to predict human exon splitting
Low correlation between mRNA concentrations measured at different locations for the same exon show many current Ensembl exon definitions are incomplete. Automatically created pa...
William B. Langdon, Joanna Rowsell, Andrew P. Harr...
CCS
2008
ACM
15 years 2 days ago
Tupni: automatic reverse engineering of input formats
Recent work has established the importance of automatic reverse engineering of protocol or file format specifications. However, the formats reverse engineered by previous tools ha...
Weidong Cui, Marcus Peinado, Karl Chen, Helen J. W...
PLANX
2008
14 years 11 months ago
XML Type Checking for Macro Tree Transducers with Holes
Macro forest transducers (mfts) extend macro tree transducers (mtts) from ranked to unranked trees. Mfts are more powerful than mtts (operating on binary tree encodings) because t...
Sebastian Maneth, Keisuke Nakano
BMCBI
2010
156views more  BMCBI 2010»
14 years 10 months ago
PeakAnalyzer: Genome-wide annotation of chromatin binding and modification loci
Background: Functional genomic studies involving high-throughput sequencing and tiling array applications, such as ChIP-seq and ChIP-chip, generate large numbers of experimentally...
Mali Salmon-Divon, Heidi Dvinge, Kairi Tammoja, Pa...
CORR
2010
Springer
153views Education» more  CORR 2010»
14 years 10 months ago
To Feed or Not to Feed Back
We study the communication over Finite State Channels (FSCs), where the encoder and the decoder can control the availability or the quality of the noise-free feedback. Specificall...
Himanshu Asnani, Haim H. Permuter, Tsachy Weissman