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» On the correlation of binary sequences
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BMCBI
2005
128views more  BMCBI 2005»
14 years 9 months ago
Transformation and other factors of the peptide mass spectrometry pairwise peak-list comparison process
Background: Biological Mass Spectrometry is used to analyse peptides and proteins. A mass spectrum generates a list of measured mass to charge ratios and intensities of ionised pe...
Witold E. Wolski, Maciej Lalowski, Peter Martus, R...
BMCBI
2004
159views more  BMCBI 2004»
14 years 9 months ago
Extractor for ESI quadrupole TOF tandem MS data enabled for high throughput batch processing
Background: Mass spectrometry based proteomics result in huge amounts of data that has to be processed in real time in order to efficiently feed identification algorithms and to e...
Andreas M. Boehm, Robert P. Galvin, Albert Sickman...
ALGORITHMICA
1999
99views more  ALGORITHMICA 1999»
14 years 9 months ago
Evolutionary Trees and Ordinal Assertions
Sequence data for a group of species is often summarized by a distance matrix M where M[s, t] is the dissimilarity between the sequences of species s and t. An ordinal assertion is...
Paul E. Kearney, Ryan Hayward, Henk Meijer
DAM
2011
14 years 5 months ago
On minimal Sturmian partial words
Partial words, which are sequences that may have some undefined positions called holes, can be viewed as sequences over an extended alphabet A = A ∪ { }, where stands for a hol...
Francine Blanchet-Sadri, John Lensmire
BIOINFORMATICS
2012
13 years 11 days ago
Epigenetic priors for identifying active transcription factor binding sites
Motivation Accurate knowledge of the genome-wide binding of transcription factors in a particular cell type or under a particular condition is necessary for understanding transcri...
Gabriel Cuellar-Partida, Fabian A. Buske, Robert C...