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» On the correlation of binary sequences
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102
Voted
BMCBI
2005
190views more  BMCBI 2005»
15 years 14 days ago
Species-specific analysis of protein sequence motifs using mutual information
Background: Protein sequence motifs are by definition short fragments of conserved amino acids, often associated with a specific function. Accordingly protein sequence profiles de...
Jan Hummel, Nima Keshvari, Wolfram Weckwerth, Joac...
325
Voted
ICDE
2003
IEEE
247views Database» more  ICDE 2003»
16 years 1 months ago
CLUSEQ: Efficient and Effective Sequence Clustering
Analyzing sequence data has become increasingly important recently in the area of biological sequences, text documents, web access logs, etc. In this paper, we investigate the pro...
Jiong Yang, Wei Wang 0010
93
Voted
BMCBI
2006
100views more  BMCBI 2006»
15 years 19 days ago
STAR: predicting recombination sites from amino acid sequence
Background: Designing novel proteins with site-directed recombination has enormous prospects. By locating effective recombination sites for swapping sequence parts, the probabilit...
Denis C. Bauer, Mikael Bodén, Ricarda Thier...
115
Voted
CSB
2003
IEEE
110views Bioinformatics» more  CSB 2003»
15 years 5 months ago
Statistical Inference for Well-ordered Structures in Nucleotide Sequences
Distinct, local structures are frequently correlated with functional RNA elements involved in posttranscriptional regulation of gene expression. Discovery of microRNAs (miRNAs) su...
Shu-Yun Le, Jih-H. Chen, Jacob V. Maizel
106
Voted
BMCBI
2010
118views more  BMCBI 2010»
15 years 21 days ago
Bacillus anthracis genome organization in light of whole transcriptome sequencing
Emerging knowledge of whole prokaryotic transcriptomes could validate a number of theoretical concepts introduced in the early days of genomics. What are the rules connecting gene...
Jeffrey Martin, Wenhan Zhu, Karla D. Passalacqua, ...