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» On the interlace polynomials of forests
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LATIN
2010
Springer
15 years 6 months ago
Some Observations on Holographic Algorithms
Abstract. We define the notion of diversity for families of finite functions, and express the limitations of a simple class of holographic algorithms in terms of limitations on d...
Leslie G. Valiant
JCT
2007
133views more  JCT 2007»
14 years 11 months ago
Biased graphs. VII. Contrabalance and antivoltages
Abstract. We develop linear representation theory for bicircular matroids, a chief example being a matroid associated with forests of a graph, and bicircular lift matroids, a chief...
Thomas Zaslavsky
FOCS
2006
IEEE
15 years 5 months ago
Inclusion--Exclusion Algorithms for Counting Set Partitions
Given an n-element set U and a family of subsets S ⊆ 2U we show how to count the number of k-partitions S1 ∪ · · · ∪ Sk = U into subsets Si ∈ S in time 2nnO(1). The only...
Andreas Björklund, Thore Husfeldt
RECOMB
2009
Springer
15 years 6 months ago
Phylogenies without Branch Bounds: Contracting the Short, Pruning the Deep
Abstract Constantinos Daskalakis1 , Elchanan Mossel2, , and Sebastien Roch1 1 Microsoft Research 2 UC Berkeley and Weizman Institute We introduce a new phylogenetic reconstruction ...
Constantinos Daskalakis, Elchanan Mossel, Sé...
RECOMB
2010
Springer
14 years 10 months ago
An Approximation Algorithm for Computing a Parsimonious First Speciation in the Gene Duplication Model
We consider the following problem: given a forest of gene family trees on a set of genomes, find a first speciation which splits these genomes into two subsets and minimizes the ...
Aïda Ouangraoua, Krister M. Swenson, Cedric C...