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» On the maximum number of edges in quasi-planar graphs
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SPAA
2004
ACM
15 years 3 months ago
Cache-oblivious shortest paths in graphs using buffer heap
We present the Buffer Heap (BH), a cache-oblivious priority queue that supports Delete-Min, Delete, and Decrease-Key operations in O( 1 B log2 N B ) amortized block transfers fro...
Rezaul Alam Chowdhury, Vijaya Ramachandran
STOC
2007
ACM
134views Algorithms» more  STOC 2007»
15 years 10 months ago
Hardness of routing with congestion in directed graphs
Given as input a directed graph on N vertices and a set of source-destination pairs, we study the problem of routing the maximum possible number of source-destination pairs on pat...
Julia Chuzhoy, Venkatesan Guruswami, Sanjeev Khann...
CSB
2004
IEEE
177views Bioinformatics» more  CSB 2004»
15 years 1 months ago
High-Throughput 3D Structural Homology Detection via NMR Resonance Assignment
One goal of the structural genomics initiative is the identification of new protein folds. Sequence-based structural homology prediction methods are an important means for priorit...
Christopher James Langmead, Bruce Randall Donald
SODA
2012
ACM
217views Algorithms» more  SODA 2012»
13 years 5 hour ago
Polynomial integrality gaps for strong SDP relaxations of Densest k-subgraph
The Densest k-subgraph problem (i.e. find a size k subgraph with maximum number of edges), is one of the notorious problems in approximation algorithms. There is a significant g...
Aditya Bhaskara, Moses Charikar, Aravindan Vijayar...
ISBRA
2009
Springer
15 years 4 months ago
Untangling Tanglegrams: Comparing Trees by Their Drawings
A tanglegram is a pair of trees on the same set of leaves with matching leaves in the two trees joined by an edge. Tanglegrams are widely used in biology – to compare evolutiona...
Balaji Venkatachalam, Jim Apple, Katherine St. Joh...